A Snakemake Toolkit for the Batch Assembly, Annotation and Phylogenetic Analysis of Mitochondrial Genomes and Ribosomal Genes From Genome Skims of Museum Collections
Published in Molecular Ecology Resources, 2024
Low coverage ‘genome-skims’ are often used to assemble organelle genomes and ribosomal gene sequences for cost-effective phylogenetic and barcoding studies. Natural history collections hold invaluable biological information, yet poor preservation resulting in degraded DNA often hinders polymerase chain reaction-based analyses.
Recommended citation: White, Oliver W., Hall, Andie, Price BW, Williams, Suzanne T., Clark, Matthew D. (2024). "A Snakemake Toolkit for the Batch Assembly, Annotation and Phylogenetic Analysis of Mitochondrial Genomes and Ribosomal Genes From Genome Skims of Museum Collections." Molecular Ecology Resources 25(1).
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